Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
ESCA rs7823917 chr8:120876611 C/T 6.81E-6 184 12.87 18.57 3.6 KM Plot
ESCA rs78267941 chr8:41349195 A/T 1.42E-7 182 13.02 18.53 2.7 KM Plot
ESCA rs7843080 chr8:120873211 A/T 4.38E-7 182 12.97 18.6 3.73 KM Plot
ESCA rs7843579 chr8:120873317 G/T 3.68E-7 183 12.97 18.58 3.73 KM Plot
ESCA rs78469766 chr17:75922389 AATG/A 1.52E-5 177 13.03 16.18 4.62 KM Plot
ESCA rs7868935 chr9:90917641 A/G 7.47E-7 184 3.7 12.95 13.4 KM Plot
ESCA rs79323458 chr15:26757842 T/A 8.91E-6 178 13.22 13.67 2.93 KM Plot
ESCA rs79398132 chr6:170143985 A/G 5.02E-8 182 12.93 20.65 1.57 KM Plot
ESCA rs795052 chr5:173946147 T/C 8.2E-5 180 8.1 13.35 13.4 KM Plot
ESCA rs7969271 chr12:112156802 T/A 4.26E-7 184 13.33 11.75 2.7 KM Plot
ESCA rs79997179 chr6:170176787 T/C 4.5E-8 183 12.87 21.3 1.57 KM Plot
ESCA rs80160640 chr1:102916802 T/C 8.43E-7 183 12.98 16.17 2.7 KM Plot
ESCA rs80220749 chr7:111239143 G/T 0 183 13.35 14.5 0.8 KM Plot
ESCA rs8025612 chr15:67125377 T/C 9.61E-5 181 13.37 14.78 6 KM Plot
ESCA rs80291679 chr8:2456125 T/G 1.6E-9 180 13.33 14.15 2.93 KM Plot